PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 279aa    MW: 32348.5 Da    PI: 9.2887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0430genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.15.3e-202168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
      Gh_A02G0430 21 KGPWTAEEDKLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68
                     79********************************************97 PP

2Myb_DNA-binding52.41.2e-1674118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
      Gh_A02G0430  74 RGQITPHEESIIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118
                      7888******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6341672IPR017930Myb domain
SuperFamilySSF466897.49E-3118115IPR009057Homeodomain-like
SMARTSM007172.7E-172070IPR001005SANT/Myb domain
PfamPF002492.1E-182168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-242275IPR009057Homeodomain-like
CDDcd001671.12E-122368No hitNo description
PROSITE profilePS5129418.37473123IPR017930Myb domain
SMARTSM007179.1E-1573121IPR001005SANT/Myb domain
PfamPF002497.6E-1474118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2476122IPR009057Homeodomain-like
CDDcd001672.70E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSWAMMAGHL GWGFIEEGWR KGPWTAEEDK LLIEYVKLHG EGRWNSVARL AGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPH EESIIIELHA RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK  120
KKNKLPSDNN TSDLKSKARL LKRQQFQQQQ LLQQQQQQLQ LQQQQEQHEQ QLQLNQLDMK  180
RIMSLLDETE NKSSVLPYVP QLRQEMATAV SYPNTTVEQQ QAGLFYPMMD FDGNVSGSGS  240
DTSNEVDVLW DGLWNLDDIN GNFGATSKVS LHNLATPFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-272112227127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149813e-67JX614981.1 Gossypium hirsutum clone NBRI_GE58733 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481171.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A0D2SBE70.0A0A0D2SBE7_G
STRINGPOPTR_0008s17350.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-84myb domain protein 79